Info • Fusarium pseudograminearum CS3096


The genome sequence and gene prediction of Fusarium pseudograminearum CS3096 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: CLCBio Genomics Workbench v. 3 (April 2010)
Sequencing Technology :: Illumina GA; Illumina GAIIx


Summary statistics for the Fusarium pseudograminearum CS3096 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.33
Sequencing read coverage depth 180X
# of contigs 381
# of scaffolds 4
# of scaffolds >= 2Kbp 4
Scaffold N50 2
Scaffold L50 (Mbp) 8.84
# of gaps 377
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 11.69, 8.84, 8.08

Gene Models ExternalModels
length (bp) of: average median
gene 1610 1356
transcript 1462 1221
exon 513 268
intron 82 56
protein length (aa) 487 407
exons per gene 2.85 2
# of gene models 12395

Genome Reference(s)


This project was not sequenced at the JGI.