Info • Fusarium solani FSSC 5 v1.0

Status

[April 2018] The Fusarium solani FSSC 5 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium solani v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.93
Sequencing read coverage depth 96.89x
# of contigs 74
# of scaffolds 74
# of scaffolds >= 2Kbp 72
Scaffold N50 9
Scaffold L50 (Mbp) 2.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.63, 4.29, 4.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57682 37217 64.5%
Ests est.fasta 153317572 150053970 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1762 1550
transcript 1612 1413
exon 546 340
intron 79 57
description:
protein length (aa) 470 399
exons per gene 2.95 2
# of gene models 17656


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.