Info • Fusarium cucurbiticola FSSC 10 v1.0

Status

[December 2018] The Fusarium cucurbiticola FSSC 10 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium cucurbiticola FSSC 10 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.45
Sequencing read coverage depth 85.8x
# of contigs 178
# of scaffolds 22
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 4.08
# of gaps 156
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 7.62, 6.20, 5.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33799 30981 91.7%
Ests est.fasta 194061566 191715508 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1802 1565
transcript 1653 1431
exon 580 360
intron 83 58
description:
protein length (aa) 474 394
exons per gene 2.85 2
# of gene models 12147


Collaborators

Jeffrey Coleman, Auburn University, USA.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.