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Info • Fusarium sp. FSSC 11 v1.0

Status

[February 2019] The Fusarium sp. FSSC 11 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium sp. FSSC 11 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.62
Sequencing read coverage depth 98.7x
# of contigs 186
# of scaffolds 39
# of scaffolds >= 2Kbp 37
Scaffold N50 6
Scaffold L50 (Mbp) 3.74
# of gaps 147
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 5.80, 5.51, 5.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42311 41362 97.8%
Ests est.fasta 498899881 431399878 86.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1775 1564
transcript 1625 1425
exon 547 340
intron 78 56
description:
protein length (aa) 471 401
exons per gene 2.97 2
# of gene models 17092


Collaborators

Jeffrey Coleman, Auburn University, USA.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.