Info • Fusarium sporotrichioides NRRL 3299 v1.0

Status

[January 2023] The Fusarium sporotrichioides NRRL 3299 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 38.01
Sequencing read coverage depth 97.97x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 2
Scaffold L50 (Mbp) 8.93
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 11.85, 8.93, 8.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51276 50609 98.7%
Ests est.fasta 494412012 491222239 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1907 1665
transcript 1771 1543
exon 621 390
intron 75 57
description:
protein length (aa) 492 411
exons per gene 2.85 2
# of gene models 12917


Collaborators

  • Li-Jun Ma, University of Massachusetts Amherst, USA
  • Robert H. Proctor, National Center for Agricultural Utilization Research, USDA-ARS.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.