Info • Fusarium avenaceum MPI-SDFR-AT-0044 v1.0

Status

This genome has been renamed from Fusarium tricinctum to Fusarium avenaceum.

[June 2018] The Fusarium tricinctum MPI-SDFR-AT-0044 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium tricinctum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.23
Sequencing read coverage depth 179.21x
# of contigs 13
# of scaffolds 13
# of scaffolds >= 2Kbp 13
Scaffold N50 4
Scaffold L50 (Mbp) 4.68
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.11, 6.12, 4.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45959 42158 91.7%
Ests est.fasta 283483418 280289664 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1866 1605
transcript 1723 1489
exon 592 370
intron 77 56
description:
protein length (aa) 492 409
exons per gene 2.91 2
# of gene models 14043


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.