Info • Fusarium venenatum MPI-CAGE-CH-0201 v1.0


[June 2018] The Fusarium venenatum MPI-CAGE-CH-0201 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium venenatum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.45
Sequencing read coverage depth 317.79x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 8
Scaffold N50 2
Scaffold L50 (Mbp) 9.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 12.01, 9.12, 8.19

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47736 43187 90.5%
Ests est.fasta 292494138 290491630 99.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1857 1614
transcript 1715 1491
exon 594 375
intron 78 56
protein length (aa) 484 405
exons per gene 2.89 2
# of gene models 12845


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.