Info • Fusarium vanettenii T110 v1.0

Status

[October 2021] The Fusarium vanettenii T110 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 48.93
Sequencing read coverage depth 86x
# of contigs 47
# of scaffolds 47
# of scaffolds >= 2Kbp 47
Scaffold N50 11
Scaffold L50 (Mbp) 1.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.53, 3.29, 2.52


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55355 49912 90.2%
Ests est.fasta 176165781 174416167 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1811 1596
transcript 1666 1462
exon 562 349
intron 75 56
description:
protein length (aa) 477 408
exons per gene 2.96 2
# of gene models 16335


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.