Info • Fusarium vanettenii T126 v1.0

Status

[October 2021] The Fusarium vanettenii T126 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 57.33
Sequencing read coverage depth 44.86x
# of contigs 142
# of scaffolds 142
# of scaffolds >= 2Kbp 141
Scaffold N50 17
Scaffold L50 (Mbp) 0.99
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.20, 2.53, 2.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48787 46919 96.2%
Ests est.fasta 104602921 103969752 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1783 1565
transcript 1636 1431
exon 557 345
intron 78 56
description:
protein length (aa) 473 402
exons per gene 2.94 2
# of gene models 18069


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.