Info • Fusarium vanettenii T23 v1.0

Status

The Fusarium vanettenii T23 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline.

Genome Assembly
Genome Assembly size (Mbp) 61.89
Sequencing read coverage depth
# of contigs 195
# of scaffolds 195
# of scaffolds >= 2Kbp 193
Scaffold N50 26
Scaffold L50 (Mbp) 0.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.48, 1.82, 1.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50296 47178 93.8%
Ests est.fasta 78156068 77442295 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1780 1560
transcript 1623 1416
exon 541 330
intron 80 56
description:
protein length (aa) 472 400
exons per gene 3.00 2
# of gene models 18783


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.