Info • Galactomyces geotrichum Phaff 72-186 v1.0

Status

[August 2021] The Galactomyces geotrichum Phaff 72-186 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 23.15
Sequencing read coverage depth 137.7x
# of contigs 1712
# of scaffolds 1580
# of scaffolds >= 2Kbp 1407
Scaffold N50 278
Scaffold L50 (Mbp) 0.03
# of gaps 132
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 0.12, 0.10, 0.08


Gene Models FilteredModels1
length (bp) of: average median
gene 1514 1263
transcript 1425 1185
exon 808 535
intron 117 75
description:
protein length (aa) 475 395
exons per gene 1.76 1
# of gene models 6826


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.