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Info • Galerina marginata v1.0

Status

This draft release was produced using shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and Roche (454) paired end. Gap closure with gapResolution closed 328 gaps (19%) in initial assembly. Newbler was the assembler. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Galerina marginata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 59.42
Sequencing read coverage depth 34.30
# of contigs 1272
# of scaffolds 414
# of scaffolds >= 2Kbp 414
Scaffold N50 15
Scaffold L50 (Mbp) 1.22
# of gaps 858
% of scaffold length in gaps 2.6%
Three largest Scaffolds (Mbp) 3.63, 3.41, 2.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 67515 63317 93.8%


Gene Models FilteredModels2
length (bp) of: average median
gene 1629 1349
transcript 1314 1080
exon 248 147
intron 75 58
description:
protein length (aa) 384 309
exons per gene 5.30 4
# of gene models 21461


Collaborators

  • PI: Jonathan Walton, MSU-DOE Plant Research Laboratory, Michigan State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.