Status
The genome sequence and gene models of Galdieria sulphuraria have not been determined by the JGI, but were downloaded from NCBI, on March 27, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Galdieria sulphuraria release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 13.71 |
| Sequencing read coverage depth | 8.55x |
| # of contigs | 483 |
| # of scaffolds | 433 |
| # of scaffolds >= 2Kbp | 426 |
| Scaffold N50 | 30 |
| Scaffold L50 (Mbp) | 0.17 |
| # of gaps | 50 |
| % of scaffold length in gaps | 2.1% |
| Three largest Scaffolds (Mbp) | 0.47, 0.31, 0.30 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1605 | 1375 |
| transcript | 1484 | 1275 |
| exon | 467 | 247 |
| intron | 57 | 53 |
| description: | ||
| protein length (aa) | 420 | 351 |
| exons per gene | 3.18 | 2 |
| # of gene models | 7174 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.
Science. 2013 Mar 8;339(6124):1207-10. doi: 10.1126/science.1231707
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.
Science. 2013 Mar 8;339(6124):1207-10. doi: 10.1126/science.1231707
Funding
This project was not sequenced at the JGI.
