Info • Ganoderma leucocontextum Dai12418 v1.0

Status

[June 2021] The Ganoderma leucocontextum Dai12418 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 60.34
Sequencing read coverage depth 18.27x
# of contigs 845
# of scaffolds 843
# of scaffolds >= 2Kbp 816
Scaffold N50 66
Scaffold L50 (Mbp) 0.21
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.72, 1.19, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 72817 69544 95.5%
Ests est.fasta 104899326 100982532 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1846 1615
transcript 1477 1278
exon 262 160
intron 81 61
description:
protein length (aa) 434 357
exons per gene 5.64 4
# of gene models 16952


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.