Info • Geastrum triplex GST.BST v1.0


[December 2018] The Geastrum triplex GST.BST genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Geastrum triplex GST.BST v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 58.57
Sequencing read coverage depth 146.6x
# of contigs 4253
# of scaffolds 1666
# of scaffolds >= 2Kbp 1309
Scaffold N50 160
Scaffold L50 (Mbp) 0.10
# of gaps 2587
% of scaffold length in gaps 23.1%
Three largest Scaffolds (Mbp) 0.78, 0.68, 0.54

Gene Models FilteredModels1
length (bp) of: average median
gene 1556 1321
transcript 1195 981
exon 197 126
intron 73 58
protein length (aa) 398 327
exons per gene 6.06 5
# of gene models 14309



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.