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Info • Gelasinospora tetrasperma v1.0

Status

[December 2017] The Gelasinospora tetrasperma CBS 560.94 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gelasinospora tetrasperma v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.86
Sequencing read coverage depth 107.74x
# of contigs 23
# of scaffolds 23
# of scaffolds >= 2Kbp 23
Scaffold N50 4
Scaffold L50 (Mbp) 4.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.46, 6.76, 4.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38506 37445 97.2%
Ests est.fasta 106393335 105228248 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1894 1657
transcript 1694 1461
exon 640 388
intron 123 73
description:
protein length (aa) 477 387
exons per gene 2.65 2
# of gene models 11251


Collaborators

Pierre Gladieux, INRA, France

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.