Info • Geranomyces variabilis JEL559 v1.0

Status

[February 2019] The Geranomyces variabilis JEL559 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Geranomyces variabilis JEL559 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 23.70
Sequencing read coverage depth 130.6x
# of contigs 290
# of scaffolds 231
# of scaffolds >= 2Kbp 205
Scaffold N50 30
Scaffold L50 (Mbp) 0.23
# of gaps 59
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.91, 0.77, 0.72


Low rate of EST mapping is due to 1 of the 2 RNA libraries being poor quality.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36064 35355 98.0%
Ests est.fasta 175423560 90455958 51.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1956 1623
transcript 1669 1374
exon 387 217
intron 89 77
description:
protein length (aa) 483 379
exons per gene 4.31 3
# of gene models 9411


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.