Info • Gigaspora margarita BEG34


The genome sequence and gene models provided here were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on September 21st, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The genome sequence of Gigaspora margarita BEG34 was assembled with ALLPATHS-LG v.3 by Stefano Ghignone (IPSP-CNR). The gene space annotation was done by Francesco Venice of UNITO using BRAKER2 pipeline.

Genome Assembly
Genome Assembly size (Mbp) 773.10
Sequencing read coverage depth
# of contigs 46230
# of scaffolds 6489
# of scaffolds >= 2Kbp 5037
Scaffold N50 743
Scaffold L50 (Mbp) 0.33
# of gaps 39741
% of scaffold length in gaps 7.3%
Three largest Scaffolds (Mbp) 1.77, 1.60, 1.41

Gene Models ExternalModels
length (bp) of: average median
gene 1475 1119
transcript 1043 768
exon 238 145
intron 129 86
protein length (aa) 348 256
exons per gene 4.39 3
# of gene models 29544


Genome Reference(s)



This project was not sequenced at the JGI.