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Info • Gigaspora rosea v1.0

Status

The genome sequence of Gigaspora rosea was not determined by the JGI.

The genome sequence was assembled with Allpath by Hélène San Clemente (Toulouse) and Claude Murat (Nancy).

The genome was provided by INRA on December 2015. The annotation was done by Emmanuelle Morin of INRA using the JGI Annotation Pipeline.

This copy of the genome does not include the mitochondrial chromosome or genes.

Summary statistics for the Gigaspora rosea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 567.95
Sequencing read coverage depth 50x
# of contigs 28997
# of scaffolds 7526
# of scaffolds >= 2Kbp 5648
Scaffold N50 734
Scaffold L50 (Mbp) 0.23
# of gaps 21471
% of scaffold length in gaps 7.9%
Three largest Scaffolds (Mbp) 1.20, 1.14, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 232327588 226017341 97.3%
Other Gigro1_RNA_contigs 86332 62141 72.0%


Gene Models FilteredModels3
length (bp) of: average median
gene 1473 1158
transcript 1029 810
exon 262 159
intron 154 87
description:
protein length (aa) 302 224
exons per gene 3.92 3
# of gene models 31291


Genome Reference(s)

Funding

This project was not sequenced at the JGI.