Info • Gloeopeniophorella convolvens OM19405 v1.0

Status

[September 2016] The Gloeopeniophorella convolvens OM19405 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gloeopeniophorella convolvens OM19405 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.99
Sequencing read coverage depth 112.83x
# of contigs 654
# of scaffolds 654
# of scaffolds >= 2Kbp 600
Scaffold N50 27
Scaffold L50 (Mbp) 0.37
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.11, 1.34, 1.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69197 65099 94.1%
Ests est.fasta 105394561 101852163 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1710 1450
transcript 1415 1193
exon 248 154
intron 65 57
description:
protein length (aa) 404 324
exons per gene 5.71 4
# of gene models 12904


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.