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Info • Glonium stellatum CBS 207.34 v1.0

Status

Assembly v1 (November 2013) is a Velvet draft assembly of Illumina gDNA reads. The sequencing and assembly were not done by JGI but by AFTOL and Oregon State University. For details, see Joey's Glonium genome site.

Summary statistics for the Glonium stellatum CBS 207.34 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.52
Sequencing read coverage depth unknown
# of contigs 4160
# of scaffolds 2730
# of scaffolds >= 2Kbp 2239
Scaffold N50 395
Scaffold L50 (Mbp) 0.03
# of gaps 1430
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.15, 0.14, 0.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other INRA_RNA_contigs 21267 20044 94.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1635 1389
transcript 1448 1209
exon 461 287
intron 89 61
description:
protein length (aa) 426 343
exons per gene 3.14 3
# of gene models 14362


Genome Reference(s)

Funding

This project was not sequenced at the JGI.