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Info • Golovinomyces cichoracearum UCSC1 v1.0

Status

[January 2018] The Golovinomyces cichoracearum UCSC1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Golovinomyces cichoracearum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 146.84
Sequencing read coverage depth 34.63x
# of contigs 821
# of scaffolds 821
# of scaffolds >= 2Kbp 821
Scaffold N50 98
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.35, 2.10, 2.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 162100 61881 38.2%
Ests est.fasta 172290062 129021646 74.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1680 1433
transcript 1483 1239
exon 433 261
intron 83 56
description:
protein length (aa) 436 350
exons per gene 3.43 3
# of gene models 6782


Collaborators

Mary Wildermuth, University of California, Berkeley.

Shauna Somerville , University of California, Berkeley.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.