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Info • Golovinomyces orontii MGH1 v4.0

Status

[November 2019] The Golovinomyces orontii MGH1 genome was sequenced using PacBio, assembled with Falcon version 0.4.2, improved with finisherSC version 2.0, and polished with Quiver version smrtanalysis_2.3.0.140936.p5.  A Hi-C library was generated by Dovetail, sequenced using Illumina HiSeq-2000, and used to improve the PacBio assembly using the "HiRise" scaffolding pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Golovinomyces orontii v4.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 211.35
Sequencing read coverage depth 16.46x
# of contigs 484
# of scaffolds 123
# of scaffolds >= 2Kbp 122
Scaffold N50 8
Scaffold L50 (Mbp) 12.24
# of gaps 361
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 14.88, 14.42, 13.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 236371 80016 33.9%
Ests est.fasta 502148157 170248872 33.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1719 1466
transcript 1538 1293
exon 467 271
intron 81 56
description:
protein length (aa) 446 360
exons per gene 3.29 3
# of gene models 12649


Collaborators

Mary Wildermuth, University of California, Berkeley.

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.