Info • Gongronella butleri v1.0

Status

[August 2016] The Gongronella butleri CBS 227.36 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gongronella butleri CBS 227 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.01
Sequencing read coverage depth 150.81x
# of contigs 112
# of scaffolds 112
# of scaffolds >= 2Kbp 112
Scaffold N50 21
Scaffold L50 (Mbp) 0.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.60, 1.40, 1.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33085 30671 92.7%
Ests est.fasta 118822651 106195640 89.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1768 1495
transcript 1443 1194
exon 326 198
intron 97 82
description:
protein length (aa) 425 343
exons per gene 4.43 4
# of gene models 11004


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.