Status
The genome sequence and gene models of Gonium pectorale have not been determined by the JGI, but were downloaded from NCBI, on March 27, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Gonium pectorale release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 148.81 |
| Sequencing read coverage depth | |
| # of contigs | 10917 |
| # of scaffolds | 2373 |
| # of scaffolds >= 2Kbp | 2373 |
| Scaffold N50 | 30 |
| Scaffold L50 (Mbp) | 1.27 |
| # of gaps | 8544 |
| % of scaffold length in gaps | 20.9% |
| Three largest Scaffolds (Mbp) | 6.38, 4.64, 4.22 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 3990 | 3045 |
| transcript | 1501 | 1104 |
| exon | 210 | 138 |
| intron | 407 | 312 |
| description: | ||
| protein length (aa) | 500 | 368 |
| exons per gene | 7.15 | 6 |
| # of gene models | 16290 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.
Nat Commun. 2016 Apr 22;7():11370. doi: 10.1038/ncomms11370
Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ
The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.
Nat Commun. 2016 Apr 22;7():11370. doi: 10.1038/ncomms11370
Funding
This project was not sequenced at the JGI.
