Info • Gorgonomyces haynaldii MP57 v1.0

Status

[June 2018] The Gorgonomyces haynaldii MP57 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gorgonomyces haynaldii MP57 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 13.98
Sequencing read coverage depth 542.15x
# of contigs 27
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 8
Scaffold L50 (Mbp) 0.60
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.60, 0.94, 0.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 18734 17415 93.0%
Ests est.fasta 195471136 89968714 46.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1404 1146
transcript 1350 1103
exon 558 369
intron 40 21
description:
protein length (aa) 411 322
exons per gene 2.42 2
# of gene models 7898


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.