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Info • Gremmeniella abietina DAOM 170408 v1.0

Status

[April 2017] The Gremmeniella abietina DAOM 170408 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Gremmeniella abietina v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.81
Sequencing read coverage depth 231.64x
# of contigs 362
# of scaffolds 362
# of scaffolds >= 2Kbp 351
Scaffold N50 40
Scaffold L50 (Mbp) 0.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.88, 0.85, 0.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43820 41524 94.8%
Ests est.fasta 94512587 94061158 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1713 1474
transcript 1547 1311
exon 536 324
intron 90 59
description:
protein length (aa) 453 373
exons per gene 2.89 3
# of gene models 11131


Collaborators

Richard Hamelin, University of British Columbia

Philippe Tanguay and Marie-Josée Bergeron, Canadian Forest Service, Laurentian Forestry Centre.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.