Status
This genome was sequenced by Scott DiGuistinia, Ye Wang et al in Department of Wood Science, University of British Columbia, Vancouver, BC V6T1Z4, Canada.
Summary statistics for the Grosmannia clavigera kw1407
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 29.79 |
| Sequencing read coverage depth | 64x |
| # of contigs | 333 |
| # of scaffolds | 289 |
| # of scaffolds >= 2Kbp | 128 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.00 |
| # of gaps | 44 |
| % of scaffold length in gaps | 2.2% |
| Three largest Scaffolds (Mbp) | 4.44, 3.09, 2.50 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1866 | 1539 |
| transcript | 1639 | 1350 |
| exon | 574 | 297 |
| intron | 125 | 71 |
| description: | ||
| protein length (aa) | 546 | 450 |
| exons per gene | 2.85 | 2 |
| # of gene models | 8312 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
DiGuistini S, Wang Y, Liao NY, Taylor G, Tanguay P, Feau N, Henrissat B, Chan SK, Hesse-Orce U, Alamouti SM, Tsui CK, Docking RT, Levasseur A, Haridas S, Robertson G, Birol I, Holt RA, Marra MA, Hamelin RC, Hirst M, Jones SJ, Bohlmann J, Breuil C
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen.
Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2504-9. doi: 10.1073/pnas.1011289108
DiGuistini S, Wang Y, Liao NY, Taylor G, Tanguay P, Feau N, Henrissat B, Chan SK, Hesse-Orce U, Alamouti SM, Tsui CK, Docking RT, Levasseur A, Haridas S, Robertson G, Birol I, Holt RA, Marra MA, Hamelin RC, Hirst M, Jones SJ, Bohlmann J, Breuil C
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen.
Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2504-9. doi: 10.1073/pnas.1011289108
Funding
This project was not sequenced at the JGI.
