Status
The Galdieria sulphuraria Azora genome sequence and gene models were not determined by the Joint Genome Insitute, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 574 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by Rossoni et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.
Genome Assembly | |
Genome Assembly size (Mbp) | 14.06 |
Sequencing read coverage depth | 46.31x |
# of contigs | 127 |
# of scaffolds | 127 |
# of scaffolds >= 2Kbp | 127 |
Scaffold N50 | 30 |
Scaffold L50 (Mbp) | 0.16 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.50, 0.36, 0.34 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1531 | 1197 |
transcript | 1315 | 1050 |
exon | 318 | 198 |
intron | 69 | 53 |
description: | ||
protein length (aa) | 438 | 350 |
exons per gene | 4.13 | 3 |
# of gene models | 5830 |
Genome Reference(s)
Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber AP
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions.
Elife. 2019 May 31;8():. doi: 10.7554/eLife.45017
Links
- JGI EcoGroup Portals: Algae
- JGI PhyloGroup Portals: Archaeplastida Rhodophyta Bangiophyceae Galdieriales