Status
June 2014. The Guyanagaster necrorhiza genome was sequenced using Illumina technology and assembled with AllPathsLG version R47710, (Gnerre et al. 2010).
Summary statistics for the Guyanagaster necrorhiza MCA
3950 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 53.69 |
| Sequencing read coverage depth | 81.5 |
| # of contigs | 656 |
| # of scaffolds | 168 |
| # of scaffolds >= 2Kbp | 147 |
| Scaffold N50 | 15 |
| Scaffold L50 (Mbp) | 1.34 |
| # of gaps | 488 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 2.90, 2.49, 2.48 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 40590 | 39635 | 97.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1636 | 1379 |
| transcript | 1317 | 1101 |
| exon | 220 | 138 |
| intron | 66 | 55 |
| description: | ||
| protein length (aa) | 377 | 306 |
| exons per gene | 5.98 | 5 |
| # of gene models | 14276 |
Collaborators
Joseph Spatafora, Oregon State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Koch RA, Yoon GM, Aryal UK, Lail K, Amirebrahimi M, LaButti K, Lipzen A, Riley R, Barry K, Henrissat B, Grigoriev IV, Herr JR, Aime MC
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Curr Biol. 2021 Sep 13;31(17):3905-3914.e6. doi: 10.1016/j.cub.2021.06.033
Koch RA, Yoon GM, Aryal UK, Lail K, Amirebrahimi M, LaButti K, Lipzen A, Riley R, Barry K, Henrissat B, Grigoriev IV, Herr JR, Aime MC
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Curr Biol. 2021 Sep 13;31(17):3905-3914.e6. doi: 10.1016/j.cub.2021.06.033
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
