Info • Guyanagaster necrorhizus MCA 3950 v1.0

Status

June 2014. The Guyanagaster necrorhiza genome was sequenced using Illumina technology and assembled with AllPathsLG version R47710, (Gnerre et al. 2010).

 

Summary statistics for the Guyanagaster necrorhiza MCA 3950 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.69
Sequencing read coverage depth 81.5
# of contigs 656
# of scaffolds 168
# of scaffolds >= 2Kbp 147
Scaffold N50 15
Scaffold L50 (Mbp) 1.34
# of gaps 488
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 2.90, 2.49, 2.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 40590 39635 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1636 1379
transcript 1317 1101
exon 220 138
intron 66 55
description:
protein length (aa) 377 306
exons per gene 5.98 5
# of gene models 14276


Collaborators

Joseph Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.