Info • Gymnopus androsaceus JB14 v1.0

Status

Assembly v1 (Jul 2014) is an improved draft assembly. A total of 2516 scaffolds and 89.1 Mbp were assembled from Illumina gDNAs using AllPathsLG and improved with PacBio reads and PBJelly.

Summary statistics for the Gymnopus androsaceus JB14 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 89.15
Sequencing read coverage depth ??x
# of contigs 2519
# of scaffolds 2516
# of scaffolds >= 2Kbp 1776
Scaffold N50 144
Scaffold L50 (Mbp) 0.17
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.23, 1.07, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 53709 51188 95.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1479 1193
transcript 1143 932
exon 211 135
intron 78 57
description:
protein length (aa) 341 266
exons per gene 5.43 4
# of gene models 29375


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.