Info • Gymnascella aurantiaca v1.0

Status

[Aug 2013] The Gymnascella aurantiaca genome was sequenced using the Illumina platform and assembled with AllPathsLG (Gnerre et al., 2010).

Summary statistics for the Gymnascella aurantiaca NRRL 5967 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.35
Sequencing read coverage depth 143.9x
# of contigs 356
# of scaffolds 347
# of scaffolds >= 2Kbp 256
Scaffold N50 42
Scaffold L50 (Mbp) 0.21
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.76, 0.44, 0.42


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 22892 22324 97.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1790 1521
transcript 1610 1353
exon 516 301
intron 87 64
description:
protein length (aa) 474 385
exons per gene 3.12 3
# of gene models 9106


Collaborators

Joseph Spatafora, Oregon State University, USA

Kerry O'Donnell, USDA, ARS.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.