Info • Gymnopus luxurians v1.0


This draft release was produced using shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and Roche (454) paired end. Newbler was the assembler. Gap closure with gapResolution closed 793 gaps (26%) in initial assembly. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Gymnopus luxurians v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 66.28
Sequencing read coverage depth 29.73
# of contigs 1848
# of scaffolds 383
# of scaffolds >= 2Kbp 383
Scaffold N50 30
Scaffold L50 (Mbp) 0.64
# of gaps 1465
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 3.44, 2.08, 1.76

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 60531 55342 91.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1566 1262
transcript 1233 1008
exon 234 143
intron 80 57
protein length (aa) 364 291
exons per gene 5.26 4
# of gene models 22057


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.