Info • Halteromyces radiatus CBS 162.75 v1.0

Status

[April 2018] The Halteromyces radiatus CBS 162.75 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Halteromyces radiatus CBS 162.75 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.22
Sequencing read coverage depth 168.8x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 4
Scaffold L50 (Mbp) 3.62
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.50, 4.33, 3.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31066 29770 95.8%
Ests est.fasta 163127574 162551585 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1852 1568
transcript 1484 1243
exon 292 179
intron 92 79
description:
protein length (aa) 438 359
exons per gene 5.09 4
# of gene models 10175


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.