Info • Hanseniaspora opuntiae AWRI3578

Status

The genome sequence and gene models of Hanseniaspora opuntiae AWRI3578 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Hanseniaspora opuntiae AWRI3578 are below.
Genome Assembly
Genome Assembly size (Mbp) 8.83
Sequencing read coverage depth 60x
# of contigs 66
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 3
Scaffold L50 (Mbp) 1.28
# of gaps 49
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.91, 1.50, 1.28


Gene Models ExternalModels
length (bp) of: average median
gene 1556 1302
transcript 1543 1293
exon 1480 1245
intron 302 175
description:
protein length (aa) 514 431
exons per gene 1.04 1
# of gene models 4167


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sternes PR, Lee D, Kutyna DR, Borneman AR
Genome Sequences of Three Species of Hanseniaspora Isolated from Spontaneous Wine Fermentations.
Genome Announc. 2016 Nov 17;4(6):. doi: 10.1128/genomeA.01287-16

Funding

This project was not sequenced at the JGI.