Info • Ogataea polymorpha NCYC 495 leu1.1 v2.0


v2.0 (September 2010):The Hansenula polymorpha NCYC 495 leu1.1 finished genome sequence assembly v2.0 was built with the Newbler assembler using whole genome shotgun and paired end sequencing reads, followed by assembly polishing. Assembly sequencing was performed using Roche (454) and fosmid (Sanger) data, and improved with one round of primer walking plus manual inspection and finishing. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Hansenula polymorpha NCYC 495 leu1.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 8.97
Sequencing read coverage depth Finished
# of contigs 9
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 4
Scaffold L50 (Mbp) 1.30
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.54, 1.52, 1.36
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 5162 4941 95.7%
Ests Ests 887515 844213 95.1%
Other GenBankFlCdna 156 138 88.5%
Gene Models FilteredModels2
length (bp) of: average median
gene 1990 1623
transcript 1949 1605
exon 1621 1326
intron 205 47
protein length (aa) 449 381
exons per gene 1.20 1
# of gene models 5177


  • Principal Investigator: Sybirny A.A.,PhD. Director, Institute of Cell Biology, NAS of Ukraine.

Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.