Info • Hebeloma cylindrosporum h7 v2.0

Status

Assembly v2 (July 2012) is an improved assembly of Solexa, PacBio, 454, and Sanger gDNA reads. A total of 176 scaffolds and 38.2 Mbp were assembled using AllPathsLG.

Summary statistics for the Hebeloma cylindrosporum h7 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.23
Sequencing read coverage depth 125.7x
# of contigs 526
# of scaffolds 176
# of scaffolds >= 2Kbp 146
Scaffold N50 12
Scaffold L50 (Mbp) 1.07
# of gaps 350
% of scaffold length in gaps 5.3%
Three largest Scaffolds (Mbp) 3.31, 2.49, 1.97


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests NCBI_CDSs_and_ESTs 4334 4071 93.9%
Other JGI_Combest_RNA_contigs 110309 108054 98.0%
Other JGI_Rnnotator_RNA_contigs 38472 36579 95.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1628 1354
transcript 1337 1107
exon 255 155
intron 71 58
description:
protein length (aa) 386 310
exons per gene 5.24 4
# of gene models 15382


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.