Info • Hebeloma brunneifolium PMI1Jessy v2.0

Status

[July 2020] The Hebeloma brunneifolium genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was sequenced separately and is available on the Download page.

Summary statistics for the Hebeloma brunneifolium PMI1Jessy v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 65.28
Sequencing read coverage depth 291.36x
# of contigs 76
# of scaffolds 76
# of scaffolds >= 2Kbp 76
Scaffold N50 13
Scaffold L50 (Mbp) 1.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.17, 4.69, 2.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 86263 83002 96.2%
Ests est.fasta 173154201 172170032 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1758 1500
transcript 1412 1183
exon 241 146
intron 73 58
description:
protein length (aa) 416 333
exons per gene 5.86 5
# of gene models 20438


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.