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Info • Heliocybe sulcata OMC1185 v1.0

Status

[Aug 2015] The Heliocybe sulcata OMC1185 genome was sequenced using Illumina and assembled with AllPathsLG (Gnerre et al. 2010).

Summary statistics for the Heliocybe sulcata OMC1185 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.95
Sequencing read coverage depth 82.2x
# of contigs 491
# of scaffolds 87
# of scaffolds >= 2Kbp 69
Scaffold N50 9
Scaffold L50 (Mbp) 1.17
# of gaps 404
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 3.42, 2.17, 1.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52086 51449 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1778 1531
transcript 1469 1251
exon 247 150
intron 64 57
description:
protein length (aa) 416 343
exons per gene 5.95 5
# of gene models 12570


Collaborators

Joseph Spatafora, Oregon State University

Laszlo Nagy, Clark University

Otto Miettinen, Clark University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.