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Info • Herpotrichiellaceae sp. JF2 05-3F Dopey v1.0

Status

[January 2021] The Herpotrichiellaceae sp. JF2 05-3F v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

The RNA sample was contaminated with other organisms, resulting in the low RNA mapping rate.

Summary statistics for the Herpotrichiellaceae sp. JF2 05-3F v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.03
Sequencing read coverage depth 194.685065296x
# of contigs 227
# of scaffolds 189
# of scaffolds >= 2Kbp 164
Scaffold N50 23
Scaffold L50 (Mbp) 0.47
# of gaps 38
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.24, 1.10, 1.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57510 32872 57.2%
Ests est.fasta 115118172 83678253 72.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1843 1655
transcript 1708 1519
exon 647 391
intron 85 60
description:
protein length (aa) 479 408
exons per gene 2.64 2
# of gene models 11506


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.