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Info • Heterobasidion annosum v1.0
Please note that this organism is for archival use only. Please see the current Heterobasidion annosum v2.0 site for the latest data and information.

Status

Assembly v1.0 (June 2009) The assembly release version 1.0 of whole shotgun reads was constructed with the Arachne assembler using paired end sequencing reads at a coverage of 8.23x.

Annotation v1.0 (June 2009) of the v1.0 assembly was produced by the JGI Annotation Pipeline, using a variety of homology-based and ab initio gene predictors. After filtering for homology support, a total of 12,270 genes were structurally and functionally annotated.

Main genome scaffold total 39
Main genome contig total 630
Main genome scaffold sequence total 33.7 MB
Main genome contig sequence total 33.1 MB (<1.9% gaps)
Main genome scaffold N/L50 6/2.2 MB
Number of scaffolds > 50 KB 18
% main genome in scaffolds > 50 KB 99.7%
Number of EST cluster consensi 10,126
Number of ESTs 40,807

Collaborators

  • Jan Stenlid Swedish University of Agricultural Sciences, Uppsala, Sweden

Genome Reference(s)

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.