Info • Heterogastridium pycnidioideum ATCC MYA-4631 v1.0


[March 2014] The Heterogastridium pycnidioideum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Heterogastridium pycnidioideum ATCC MYA-4631 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.58
Sequencing read coverage depth 109x
# of contigs 296
# of scaffolds 117
# of scaffolds >= 2Kbp 83
Scaffold N50 10
Scaffold L50 (Mbp) 0.63
# of gaps 179
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 1.60, 1.28, 1.04

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Trinity assembled Illumina ESTs 28993 23698 81.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1738 1493
transcript 1496 1282
exon 246 154
intron 50 45
protein length (aa) 444 368
exons per gene 6.08 5
# of gene models 7658


Joseph Spatafora, Oregon State University, USA
Mary Catherine Aime, Purdue University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.