Info • Hirsutella minnesotensis 3608

Status

The Hirsutella minnesotensis 3608 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 5, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Hirsutella minnesotensis 3608 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.06
Sequencing read coverage depth 128.3x
# of contigs 1890
# of scaffolds 731
# of scaffolds >= 2Kbp 731
Scaffold N50 35
Scaffold L50 (Mbp) 0.38
# of gaps 1159
% of scaffold length in gaps 2.4%
Three largest Scaffolds (Mbp) 1.67, 1.46, 1.22


Gene Models FilteredModels1
length (bp) of: average median
gene 1607 1336
transcript 1472 1212
exon 547 308
intron 82 64
description:
protein length (aa) 491 404
exons per gene 2.69 2
# of gene models 10463


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lai Y, Liu K, Zhang X, Zhang X, Li K, Wang N, Shu C, Wu Y, Wang C, Bushley KE, Xiang M, Liu X
Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis.
Genome Biol Evol. 2014 Oct 30;6(11):3077-93. doi: 10.1093/gbe/evu241

Funding

This project was not sequenced at the JGI.