Info • Hortaea acidophila CBS 113389 v1.0

Status

[April 2016] The Hortaea acidophila CBS 113389 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hortaea acidophila v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.43
Sequencing read coverage depth 100.7x
# of contigs 59
# of scaffolds 39
# of scaffolds >= 2Kbp 33
Scaffold N50 5
Scaffold L50 (Mbp) 1.94
# of gaps 20
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.73, 2.23, 2.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 21132 19485 92.2%
Ests est.fasta 165953584 163612406 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1647 1420
transcript 1554 1326
exon 666 391
intron 72 60
description:
protein length (aa) 456 377
exons per gene 2.33 2
# of gene models 9831


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.