Info • Hortaea thailandica CCFEE 6315

Status

The Hortaea thailandica CCFEE 6315 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Apr 17, 2021. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 23.88
Sequencing read coverage depth 80.0x
# of contigs 186
# of scaffolds 155
# of scaffolds >= 2Kbp 126
Scaffold N50 23
Scaffold L50 (Mbp) 0.33
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.02, 0.82, 0.74


Gene Models ExternalModels
length (bp) of: average median
gene 1708 1392
transcript 1550 1272
exon 667 338
intron 122 66
description:
protein length (aa) 517 424
exons per gene 2.32 2
# of gene models 8778


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE
Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus.
Fungal Biol. 2020 May;124(5):458-467. doi: 10.1016/j.funbio.2020.01.005

Funding

This project was not sequenced at the JGI.