Status
The genome of Hortaea werneckii EXF-2000 M0 was not sequenced at JGI, rather it was acquired from Jason Stajich in June, 2016. Please cite Lenassi et al., 2013 if you use this genome in your work.
Summary statistics for the Hortaea werneckii EXF-2000 M0
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 49.94 |
| Sequencing read coverage depth | NA |
| # of contigs | 651 |
| # of scaffolds | 651 |
| # of scaffolds >= 2Kbp | 614 |
| Scaffold N50 | 100 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.79, 0.71, 0.56 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1656 | 1413 |
| transcript | 1530 | 1296 |
| exon | 673 | 364 |
| intron | 102 | 63 |
| description: | ||
| protein length (aa) | 510 | 432 |
| exons per gene | 2.27 | 2 |
| # of gene models | 15748 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, Jones S, Birol I, Cimerman NG, Plemenitaš A
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.
PLoS One. 2013;8(8):e71328. doi: 10.1371/journal.pone.0071328
Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, Jones S, Birol I, Cimerman NG, Plemenitaš A
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.
PLoS One. 2013;8(8):e71328. doi: 10.1371/journal.pone.0071328
Funding
This project was not sequenced at the JGI.
