Info • Humicola hyalothermophila CBS 45480

Status

The genome sequence and gene prediction of Humicola hyalothermophila CBS 45480 have not been determined by the Joint Genome Institute (JGI), but were downloaded from CSFG on July 31, 2022. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Genome Assembly
Genome Assembly size (Mbp) 27.59
# of contigs 3558
# of scaffolds 2582
# of scaffolds >= 2Kbp 2273
Scaffold N50 500
Scaffold L50 (Mbp) 0.02
# of gaps 976
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 0.12, 0.08, 0.08


Gene Models ExternalModels
length (bp) of: average median
gene 1440 1146
transcript 1294 1005
exon 502 258
intron 95 69
description:
protein length (aa) 431 335
exons per gene 2.58 2
# of gene models 9529


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w

Funding

This project was not sequenced at the JGI.