Info • Hypoxylon sp. FL1150 v1.0

Status

[August 2019] The Hypoxylon sp. FL1150 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon sp. FL1150 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.56
Sequencing read coverage depth 130.72x
# of contigs 797
# of scaffolds 778
# of scaffolds >= 2Kbp 637
Scaffold N50 64
Scaffold L50 (Mbp) 0.21
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.90, 0.57, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50774 49873 98.2%
Ests est.fasta 162544742 160854739 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1987 1777
transcript 1812 1601
exon 617 387
intron 93 65
description:
protein length (aa) 475 398
exons per gene 2.94 3
# of gene models 11226


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.