Info • Hypoxylon sp. FL1284 v2.0

Status

[December 2019] The Hypoxylon sp. FL1284 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon sp. FL1284 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.09
Sequencing read coverage depth 442.84x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 6
Scaffold L50 (Mbp) 2.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.04, 3.73, 3.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51320 50316 98.0%
Ests est.fasta 195722185 194256081 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2024 1798
transcript 1849 1632
exon 626 394
intron 91 67
description:
protein length (aa) 483 402
exons per gene 2.96 3
# of gene models 10896


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.