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Info • Hypoxylon sp. FL1857 v1.0


[June 2019] The Hypoxylon sp. FL1857 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon sp. FL1857 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.39
Sequencing read coverage depth 135.39232992126x
# of contigs 159
# of scaffolds 146
# of scaffolds >= 2Kbp 134
Scaffold N50 22
Scaffold L50 (Mbp) 0.68
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.52, 1.47, 1.33

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34741 33746 97.1%
Ests est.fasta 60636518 59954292 98.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1950 1736
transcript 1788 1583
exon 606 379
intron 85 64
protein length (aa) 483 407
exons per gene 2.95 2
# of gene models 11993



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.